Detailed information of SNP:
|
SNP ID:
sf0406177335(Gbrowse)
Chromosome: chr04 Position: 6177335 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 95.47% | 4.53% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 492 | 90.24% | 9.76% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 330 | 86.06% | 13.94% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406177335 | T->A | INTERGENIC | None |