Detailed information of SNP:
|
SNP ID:
sf0406194870(Gbrowse)
Chromosome: chr04 Position: 6194870 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 72.53% | 27.47% |
| All Indica | 796 | 65.45% | 34.55% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 212 | 34.91% | 65.09% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406194870 | T->C | INTERGENIC | None |