Detailed information of SNP:
|
SNP ID:
sf0406204590(Gbrowse)
Chromosome: chr04 Position: 6204590 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 94.41% | 5.59% |
| All Indica | 770 | 95.58% | 4.42% |
| All Japonica | 493 | 96.35% | 3.65% |
| Aus | 60 | 73.33% | 26.67% |
| Indica I | 356 | 94.66% | 5.34% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 331 | 95.47% | 4.53% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406204590 | T->A | INTERGENIC | None |