Detailed information of SNP:
|
SNP ID:
sf0406207752(Gbrowse)
Chromosome: chr04 Position: 6207752 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 92.99% | 7.01% |
| All Indica | 774 | 94.19% | 5.81% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 58 | 75.86% | 24.14% |
| Indica I | 360 | 91.94% | 8.06% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 202 | 95.05% | 4.95% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406207752 | G->A | LOC_Os04g11370(LOC_Os04g11370.1) | INTRON |