Detailed information of SNP:
|
SNP ID:
sf0406220265(Gbrowse)
Chromosome: chr04 Position: 6220265 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 66.29% | 33.71% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 493 | 10.75% | 89.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 13.25% | 86.75% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406220265 | A->G | INTERGENIC | None |