Detailed information of SNP:
|
SNP ID:
sf0406234349(Gbrowse)
Chromosome: chr04 Position: 6234349 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 63.36% | 36.64% |
| All Indica | 787 | 94.66% | 5.34% |
| All Japonica | 494 | 10.12% | 89.88% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 205 | 87.80% | 12.20% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 334 | 13.17% | 86.83% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406234349 | T->C | LOC_Os04g11420(LOC_Os04g11420.1) | INTRON |