Detailed information of SNP:
|
SNP ID:
sf0406253993(Gbrowse)
Chromosome: chr04 Position: 6253993 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.88% | 24.12% |
| All Indica | 799 | 63.83% | 36.17% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406253993 | G->A | INTERGENIC | None |