Detailed information of SNP:
|
SNP ID:
sf0406255685(Gbrowse)
Chromosome: chr04 Position: 6255685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 96.12% | 3.88% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 345 | 86.09% | 13.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 230 | 79.57% | 20.43% |
| Tropical Japonica | 69 | 98.55% | 1.45% |
| Japonica Intermediate | 46 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406255685 | C->T | INTERGENIC | None |