Detailed information of SNP:
|
SNP ID:
sf0406260917(Gbrowse)
Chromosome: chr04 Position: 6260917 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 65.69% | 34.31% |
| All Indica | 795 | 97.48% | 2.52% |
| All Japonica | 492 | 9.55% | 90.45% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 330 | 10.00% | 90.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406260917 | T->C | INTERGENIC | None |