Detailed information of SNP:
|
SNP ID:
sf0406261160(Gbrowse)
Chromosome: chr04 Position: 6261160 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 61.45% | 38.55% |
| All Indica | 788 | 93.78% | 6.22% |
| All Japonica | 496 | 5.65% | 94.35% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 95.41% | 4.59% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406261160 | A->G | INTERGENIC | None |