Detailed information of SNP:
|
SNP ID:
sf0406275338(Gbrowse)
Chromosome: chr04 Position: 6275338 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 91.38% | 8.62% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 447 | 75.17% | 24.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 303 | 75.91% | 24.09% |
| Tropical Japonica | 85 | 92.94% | 7.06% |
| Japonica Intermediate | 59 | 45.76% | 54.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406275338 | A->G | LOC_Os04g11480(LOC_Os04g11480.1) | Synonymous |