Detailed information of SNP:
|
SNP ID:
sf0406282434(Gbrowse)
Chromosome: chr04 Position: 6282434 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 63.27% | 36.73% |
| All Indica | 790 | 94.43% | 5.57% |
| All Japonica | 497 | 10.87% | 89.13% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 205 | 92.20% | 7.80% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406282434 | T->C | LOC_Os04g11500(LOC_Os04g11500.1) | Synonymous |