Detailed information of SNP:
|
SNP ID:
sf0406285024(Gbrowse)
Chromosome: chr04 Position: 6285024 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 91.75% | 8.25% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406285024 | G->A | INTERGENIC | None |