Detailed information of SNP:
|
SNP ID:
sf0406320535(Gbrowse)
Chromosome: chr04 Position: 6320535 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 64.36% | 35.64% |
| All Indica | 789 | 38.40% | 61.60% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 62 | 87.10% | 12.90% |
| Indica I | 375 | 24.00% | 76.00% |
| Indica II | 205 | 39.02% | 60.98% |
| Indica Intermediate | 209 | 63.64% | 36.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406320535 | C->T | INTERGENIC | None |