Detailed information of SNP:
|
SNP ID:
sf0406327995(Gbrowse)
Chromosome: chr04 Position: 6327995 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 57.84% | 42.16% |
| All Indica | 774 | 87.21% | 12.79% |
| All Japonica | 497 | 11.27% | 88.73% |
| Aus | 64 | 67.19% | 32.81% |
| Indica I | 369 | 88.89% | 11.11% |
| Indica II | 199 | 79.40% | 20.60% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 14.03% | 85.97% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406327995 | A->C | INTERGENIC | None |