Detailed information of SNP:
|
SNP ID:
sf0406340418(Gbrowse)
Chromosome: chr04 Position: 6340418 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.14% | 6.86% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406340418 | C->T | INTERGENIC | None |