Detailed information of SNP:
|
SNP ID:
sf0406340845(Gbrowse)
Chromosome: chr04 Position: 6340845 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 93.20% | 6.80% |
| All Indica | 795 | 95.09% | 4.91% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406340845 | A->T | LOC_Os04g11580(LOC_Os04g11580.1) | INTRON |