Detailed information of SNP:
|
SNP ID:
sf0406340965(Gbrowse)
Chromosome: chr04 Position: 6340965 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 94.11% | 5.89% |
| All Indica | 793 | 95.33% | 4.67% |
| All Japonica | 495 | 95.96% | 4.04% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406340965 | G->A | LOC_Os04g11580(LOC_Os04g11580.1) | INTRON |