Detailed information of SNP:
|
SNP ID:
sf0406341030(Gbrowse)
Chromosome: chr04 Position: 6341030 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 91.67% | 8.33% |
| All Indica | 783 | 97.83% | 2.17% |
| All Japonica | 493 | 84.58% | 15.42% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 366 | 98.09% | 1.91% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 331 | 96.37% | 3.63% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406341030 | G->A | LOC_Os04g11580(LOC_Os04g11580.1) | INTRON |