Detailed information of SNP:
|
SNP ID:
sf0406351537(Gbrowse)
Chromosome: chr04 Position: 6351537 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 95.69% | 4.31% |
| All Indica | 787 | 97.59% | 2.41% |
| All Japonica | 491 | 96.54% | 3.46% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 370 | 96.76% | 3.24% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 331 | 95.47% | 4.53% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406351537 | C->A | INTERGENIC | None |