Detailed information of SNP:
|
SNP ID:
sf0406351857(Gbrowse)
Chromosome: chr04 Position: 6351857 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 58.30% | 41.70% |
| All Indica | 776 | 88.66% | 11.34% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 364 | 86.54% | 13.46% |
| Indica II | 203 | 87.19% | 12.81% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 36 | 47.22% | 52.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406351857 | A->G | INTERGENIC | None |