Detailed information of SNP:
|
SNP ID:
sf0406353703(Gbrowse)
Chromosome: chr04 Position: 6353703 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 65.13% | 34.87% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 495 | 12.32% | 87.68% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 14.37% | 85.63% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406353703 | A->G | LOC_Os04g11620(LOC_Os04g11620.1) | Synonymous |