Detailed information of SNP:
|
SNP ID:
sf0406354155(Gbrowse)
Chromosome: chr04 Position: 6354155 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 94.52% | 5.48% |
| All Indica | 789 | 96.83% | 3.17% |
| All Japonica | 495 | 95.56% | 4.44% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 370 | 96.22% | 3.78% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406354155 | C->T | LOC_Os04g11620(LOC_Os04g11620.1) | Non-Synonymous SNP |