Detailed information of SNP:
|
SNP ID:
sf0406356542(Gbrowse)
Chromosome: chr04 Position: 6356542 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 90.45% | 9.55% |
| All Indica | 784 | 83.55% | 16.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 87.50% | 12.50% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 206 | 69.42% | 30.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406356542 | G->A | LOC_Os04g11620(LOC_Os04g11620.1) | Synonymous |