Detailed information of SNP:
|
SNP ID:
sf0406356754(Gbrowse)
Chromosome: chr04 Position: 6356754 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 94.29% | 5.71% |
| All Indica | 792 | 95.58% | 4.42% |
| All Japonica | 495 | 95.96% | 4.04% |
| Aus | 60 | 78.33% | 21.67% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406356754 | G->A | LOC_Os04g11620(LOC_Os04g11620.1) | Non-Synonymous SNP |