Detailed information of SNP:
|
SNP ID:
sf0406357553(Gbrowse)
Chromosome: chr04 Position: 6357553 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 92.30% | 7.70% |
| All Indica | 796 | 94.85% | 5.15% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406357553 | G->A | LOC_Os04g11620(LOC_Os04g11620.1) | SNPs that introduce stop codons |