Detailed information of SNP:
|
SNP ID:
sf0406369392(Gbrowse)
Chromosome: chr04 Position: 6369392 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.37% | 17.63% |
| All Indica | 798 | 82.83% | 17.17% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406369392 | C->T | LOC_Os04g11630(LOC_Os04g11630.1) | INTRON |