Detailed information of SNP:
|
SNP ID:
sf0406396089(Gbrowse)
Chromosome: chr04 Position: 6396089 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 51.03% | 48.97% |
| All Indica | 787 | 26.81% | 73.19% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 15.24% | 84.76% |
| Indica II | 204 | 29.90% | 70.10% |
| Indica Intermediate | 209 | 44.50% | 55.50% |
| Temperate Japonica | 334 | 94.61% | 5.39% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406396089 | A->T | INTERGENIC | None |