Detailed information of SNP:
|
SNP ID:
sf0406400003(Gbrowse)
Chromosome: chr04 Position: 6400003 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.81% | 42.19% |
| All Indica | 798 | 87.97% | 12.03% |
| All Japonica | 495 | 10.91% | 89.09% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 11.94% | 88.06% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406400003 | A->G | INTERGENIC | None |