Detailed information of SNP:
|
SNP ID:
sf0406400393(Gbrowse)
Chromosome: chr04 Position: 6400393 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 96.74% | 3.26% |
| All Indica | 778 | 98.71% | 1.29% |
| All Japonica | 487 | 97.74% | 2.26% |
| Aus | 60 | 81.67% | 18.33% |
| Indica I | 363 | 98.62% | 1.38% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 202 | 98.02% | 1.98% |
| Temperate Japonica | 325 | 97.54% | 2.46% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406400393 | T->C | INTERGENIC | None |