Detailed information of SNP:
|
SNP ID:
sf0406409298(Gbrowse)
Chromosome: chr04 Position: 6409298 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.57% | 39.43% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406409298 | C->A | LOC_Os04g11690(LOC_Os04g11690.1) | Non-Synonymous SNP |