Detailed information of SNP:
|
SNP ID:
sf0406413423(Gbrowse)
Chromosome: chr04 Position: 6413423 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 64.24% | 35.76% |
| All Indica | 796 | 97.74% | 2.26% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406413423 | A->G | LOC_Os04g11700(LOC_Os04g11700.1) | Non-Synonymous SNP |