Detailed information of SNP:
|
SNP ID:
sf0406414864(Gbrowse)
Chromosome: chr04 Position: 6414864 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1227 | 55.66% | 44.34% |
| All Indica | 649 | 26.66% | 73.34% |
| All Japonica | 490 | 96.33% | 3.67% |
| Aus | 41 | 19.51% | 80.49% |
| Indica I | 304 | 15.79% | 84.21% |
| Indica II | 174 | 45.98% | 54.02% |
| Indica Intermediate | 171 | 26.32% | 73.68% |
| Temperate Japonica | 331 | 95.17% | 4.83% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406414864 | G->A | INTERGENIC | None |