Detailed information of SNP:
|
SNP ID:
sf0406416026(Gbrowse)
Chromosome: chr04 Position: 6416026 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 65.68% | 34.32% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 495 | 6.87% | 93.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406416026 | T->C | LOC_Os04g11720(LOC_Os04g11720.1) | Non-Synonymous SNP |