Detailed information of SNP:



SNP ID: sf0406416091(Gbrowse)

Chromosome: chr04

Position: 6416091
Major allele: C

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of G(minor allele)
All1419 64.83% 35.17%
All Indica799 98.75% 1.25%
All Japonica497 5.43% 94.57%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 96.71% 3.29%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 5.97% 94.03%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 7.35% 92.65%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 54.76% 45.24%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0406416091 G->C LOC_Os04g11720(LOC_Os04g11720.1) Non-Synonymous SNP