Detailed information of SNP:
|
SNP ID:
sf0406416168(Gbrowse)
Chromosome: chr04 Position: 6416168 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 63.61% | 36.39% |
| All Indica | 791 | 97.47% | 2.53% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406416168 | G->A | LOC_Os04g11720(LOC_Os04g11720.1) | Synonymous |