Detailed information of SNP:
|
SNP ID:
sf0406416444(Gbrowse)
Chromosome: chr04 Position: 6416444 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 64.00% | 36.00% |
| All Indica | 796 | 97.74% | 2.26% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406416444 | C->T | LOC_Os04g11720(LOC_Os04g11720.1) | Synonymous |