Detailed information of SNP:



SNP ID: sf0406418077(Gbrowse)

Chromosome: chr04

Position: 6418077
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 64.74% 35.26%
All Indica798 98.75% 1.25%
All Japonica497 5.23% 94.77%
Aus67 100.00% 0.00%
Indica I375 98.93% 1.07%
Indica II212 97.17% 2.83%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 5.97% 94.03%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 5.88% 94.12%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 54.76% 45.24%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0406418077 C->T LOC_Os04g11720(LOC_Os04g11720.1) Non-Synonymous SNP