Detailed information of SNP:
|
SNP ID:
sf0406445127(Gbrowse)
Chromosome: chr04 Position: 6445127 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.30% | 37.70% |
| All Indica | 799 | 42.80% | 57.20% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406445127 | T->C | LOC_Os04g11780(LOC_Os04g11780.1) | Synonymous |