Detailed information of SNP:
|
SNP ID:
sf0406459106(Gbrowse)
Chromosome: chr04 Position: 6459106 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 80.66% | 19.34% |
| All Indica | 797 | 79.30% | 20.70% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406459106 | A->G | INTERGENIC | None |