Detailed information of SNP:
|
SNP ID:
sf0406467808(Gbrowse)
Chromosome: chr04 Position: 6467808 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 798 | 23.31% | 76.69% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 7.20% | 92.80% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 210 | 29.52% | 70.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406467808 | G->A | LOC_Os04g11810(LOC_Os04g11810.1) | Synonymous |