Detailed information of SNP:
|
SNP ID:
sf0406476386(Gbrowse)
Chromosome: chr04 Position: 6476386 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.30% | 48.70% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406476386 | C->T | LOC_Os04g11820(LOC_Os04g11820.1) | INTRON |