Detailed information of SNP:
|
SNP ID:
sf0406484979(Gbrowse)
Chromosome: chr04 Position: 6484979 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 68.03% | 31.97% |
| All Indica | 797 | 47.18% | 52.82% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406484979 | G->A | INTERGENIC | None |