Detailed information of SNP:
|
SNP ID:
sf0406493608(Gbrowse)
Chromosome: chr04 Position: 6493608 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 58.97% | 41.03% |
| All Indica | 775 | 31.61% | 68.39% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 367 | 12.81% | 87.19% |
| Indica II | 210 | 68.57% | 31.43% |
| Indica Intermediate | 198 | 27.27% | 72.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406493608 | T->A | INTERGENIC | None |