Detailed information of SNP:
|
SNP ID:
sf0406494014(Gbrowse)
Chromosome: chr04 Position: 6494014 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1306 | 50.92% | 49.08% |
| All Indica | 702 | 18.52% | 81.48% |
| All Japonica | 492 | 98.78% | 1.22% |
| Aus | 62 | 24.19% | 75.81% |
| Indica I | 334 | 11.68% | 88.32% |
| Indica II | 204 | 12.75% | 87.25% |
| Indica Intermediate | 164 | 39.63% | 60.37% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406494014 | T->G | INTERGENIC | None |