Detailed information of SNP:
|
SNP ID:
sf0406498287(Gbrowse)
Chromosome: chr04 Position: 6498287 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 54.25% | 45.75% |
| All Indica | 796 | 23.74% | 76.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 2.93% | 97.07% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 208 | 19.23% | 80.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406498287 | G->A | LOC_Os04g11850(LOC_Os04g11850.1) | Synonymous |