Detailed information of SNP:
|
SNP ID:
sf0406498453(Gbrowse)
Chromosome: chr04 Position: 6498453 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 56.95% | 43.05% |
| All Indica | 762 | 27.30% | 72.70% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 350 | 9.43% | 90.57% |
| Indica II | 211 | 62.09% | 37.91% |
| Indica Intermediate | 201 | 21.89% | 78.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406498453 | C->T | LOC_Os04g11850(LOC_Os04g11850.1) | Non-Synonymous SNP |