Detailed information of SNP:
|
SNP ID:
sf0406505806(Gbrowse)
Chromosome: chr04 Position: 6505806 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 54.05% | 45.95% |
| All Indica | 799 | 23.28% | 76.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 2.13% | 97.87% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406505806 | G->A | INTERGENIC | None |