Detailed information of SNP:
|
SNP ID:
sf0406514730(Gbrowse)
Chromosome: chr04 Position: 6514730 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1276 | 72.26% | 27.74% |
| All Indica | 796 | 99.25% | 0.75% |
| All Japonica | 360 | 8.33% | 91.67% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 237 | 8.86% | 91.14% |
| Tropical Japonica | 73 | 4.11% | 95.89% |
| Japonica Intermediate | 50 | 12.00% | 88.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406514730 | T->C | INTERGENIC | None |