Detailed information of SNP:
|
SNP ID:
sf0406521323(Gbrowse)
Chromosome: chr04 Position: 6521323 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 97.62% | 2.38% |
| All Indica | 773 | 96.77% | 3.23% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 361 | 96.12% | 3.88% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 201 | 95.02% | 4.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406521323 | C->T | LOC_Os04g11900(LOC_Os04g11900.1) | INTRON |